Bacteroidales bacterium WCE2004
Introduction
Bacteroidales bacterium WCE2004
Bacteroidales bacterium WCE2004 was isolated from the plant-adherent fraction of bovine rumen contents in NZ [1, cow E]. It has not been phenotypically characterized but the genome encodes numerous glycosyl hydrolases suggesting a role in polysaccharide degradation. WCE2004 belongs in the proposed genus “Candidatus Cryptobacteroides". In GTDB Cryptobacteroides is a genus within the unnamed family UBA932. These bacteria are abundant in the rumen (formerly referred to as the RC-9 gut group), but very few cultures have been isolated.
The draft genome for WCE2004 (2,322,854 bp) was generated through the Hungate1000 project with JGI [2].
NCBI: Bacteroidales bacterium.
GTDB: Cryptobacteroides sp900167895.
Risk group: Not assigned.
Global Methane Hub Metadata
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Genome
DefenseFinder Results
Methylome
Methylating E. coli Strains
Culturing Conditions
Antibiotic MIC Tests
Protocols
Transformation Results
External Links
[1] Noel S. 2013. Cultivation and community composition analysis of plant-adherent rumen bacteria. PhD dissertation. Massey University, Palmerston North, New Zealand. https://mro.massey.ac.nz/server/api/core/bitstreams/bcfbe4cb-19a9-40c0-b5e8-61f9ddb90ce0/content.
[2] Seshadri R, Leahy SC, Attwood GT, Teh KH, Lambie SC, Cookson AL, Eloe-Fadrosh EA, Pavlopoulos GA, Hadjithomas M, Varghese NJ, Paez-Espino D; Hungate1000 project collaborators; Perry R, Henderson G, Creevey CJ, Terrapon N, Lapebie P, Drula E, Lombard V, Rubin E, Kyrpides NC, Henrissat B, Woyke T, Ivanova NN, Kelly WJ. 2019. Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection. Nature Biotechnol 36: 359-367. doi: 10.1038/nbt.4110.
