Introduction
Strain characteristics and function in the rumen
Strain history and information
| Strain origin:
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New Zealand1
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| Isolated from:
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Cow rumen
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| Sequenced by:
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Rhiannon Cecil2
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| Assembled by:
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William G. Alexander3
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| Genome and methylome analysis by:
|
William G. Alexander3 & Ashley Hall2
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| MIC and culturing conditions by:
|
Rhiannon Cecil
|
| Transformed by:
|
Rhiannon Cecil
|
1Institute for Bioeconomy Science, Palmerston North, New Zealand. 2BiomEdit, Indianapolis, Indiana, United States. 3Oak Ridge National Lab, Oak Ridge, Tennessee, United States.
Genome
| K. vitulina WCE2011 Genome Summary
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| Sequencing method
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Oxford Nanopore
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| Contigs
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1
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| Base pairs
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2.1 Mb
|
| CDSs
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2,021
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| CRISPR
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2
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| Genes
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2,166
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| rRNA
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24
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| tRNA
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89
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| Miscellaneous RNA
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31
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| Antimicrobial resistance genes
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None
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Methylome
Methylome analysis summary results
| K. vitulina WCE2011 Methylome Summary
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| Isolation Motif
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% Motif Methylation
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DefenseFinder Results
| K. vitulina WCE2011 DefenseFinder Results
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| DefenseFinder System
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# Found
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Methylating Escherichia coli strains
E. coli strain AGXXXXX engineered to carry methytransferases X, X, X for methylating plasmid DNA for K. vitulina WCE2011.
Culturing Conditions
Antimicrobial Susceptibility
External Links
