Butyrivibrio hungatei MB2003: Difference between revisions
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Introduction and external links |
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== Introduction == | |||
'''Butyrivibrio hungatei MB2003''' | |||
Butyrivibrio hungatei MB2003 (DSM 120820) was isolated from the plant-adherent fraction of bovine rumen contents in NZ [1, cow B, 2]. It ferments a range of carbohydrates but has a smaller genome and a more limited repertoire of carbohydrate active enzymes than other Butyrivibrio species (81 glycosyl hydrolases, 86 glycosyl transferases, 3 polysaccharide lyases, 8 carbohydrate esterases) [3, 4]. | |||
The MB2003 genome (3,386,314 bp) consists of a chromosome (3,143,784 bp) and three plasmids (144,470 bp, 91,776 bp and 6,284 bp) [5]. | |||
LPSN: Butyrivibrio hungatei Kopecný et al. 2003 | |||
NCBI: Butyrivibrio hungatei. | |||
GTDB: Butyrivibrio hungatei. Groups with the type strain of B. hungatei (JK615<sup>T</sup>, DSM 14810) [6] | |||
Risk group: 1 | |||
== Methylome == | == Methylome == | ||
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== External Links == | |||
[1] Noel S. 2013. Cultivation and community composition analysis of plant-adherent rumen bacteria. PhD dissertation. Massey University, Palmerston North, New Zealand. <nowiki>https://mro.massey.ac.nz/server/api/core/bitstreams/bcfbe4cb-19a9-40c0-b5e8-61f9ddb90ce0/content</nowiki>. | |||
[2] <nowiki>https://bacdive.dsmz.de/strain/176811</nowiki> | |||
[3] Palevich N, Kelly WJ, Ganesh S, Rakonjac J, Attwood GT. 2019. Butyrivibrio hungatei MB2003 competes effectively for soluble sugars released by Butyrivibrio proteoclasticus B316T during growth on xylan or pectin. Appl Environ Microbiol 85: e02056-18. doi: 10.1128/AEM.02056-18. | |||
[4] <nowiki>https://www.cazy.org/b7466.html</nowiki> | |||
[5] Palevich N, Kelly WJ, Leahy SC, Altermann E, Rakonjac J, Attwood GT. 2017. The complete genome sequence of the rumen bacterium Butyrivibrio hungatei MB2003. Stand Genomic Sci 12: 72. doi: 10.1186/s40793-017-0285-8. | |||
[6] Kopecny J, Zorec M, Mrazek J, Kobayashi Y, Marinsek-Logar R. 2003. Butyrivibrio hungatei sp. nov. and Pseudobutyrivibrio xylanivorans sp. nov., butyrate-producing bacteria from the rumen. Int J Syst Evol Microbiol 53: 201–9. doi: 10.1099/ijs.0.02345-0. | |||
Revision as of 22:12, 20 October 2026
Introduction
Butyrivibrio hungatei MB2003
Butyrivibrio hungatei MB2003 (DSM 120820) was isolated from the plant-adherent fraction of bovine rumen contents in NZ [1, cow B, 2]. It ferments a range of carbohydrates but has a smaller genome and a more limited repertoire of carbohydrate active enzymes than other Butyrivibrio species (81 glycosyl hydrolases, 86 glycosyl transferases, 3 polysaccharide lyases, 8 carbohydrate esterases) [3, 4].
The MB2003 genome (3,386,314 bp) consists of a chromosome (3,143,784 bp) and three plasmids (144,470 bp, 91,776 bp and 6,284 bp) [5].
LPSN: Butyrivibrio hungatei Kopecný et al. 2003
NCBI: Butyrivibrio hungatei.
GTDB: Butyrivibrio hungatei. Groups with the type strain of B. hungatei (JK615T, DSM 14810) [6]
Risk group: 1
Methylome
| Motif | Percent methylated |
|---|---|
| C(6mA)CNNNNNNTGTT/
AAC(6mA)NNNNNNGTG |
94.54%/94.83% |
| ATTA(6mA)T | 97.76% |
External Links
[1] Noel S. 2013. Cultivation and community composition analysis of plant-adherent rumen bacteria. PhD dissertation. Massey University, Palmerston North, New Zealand. https://mro.massey.ac.nz/server/api/core/bitstreams/bcfbe4cb-19a9-40c0-b5e8-61f9ddb90ce0/content.
[2] https://bacdive.dsmz.de/strain/176811
[3] Palevich N, Kelly WJ, Ganesh S, Rakonjac J, Attwood GT. 2019. Butyrivibrio hungatei MB2003 competes effectively for soluble sugars released by Butyrivibrio proteoclasticus B316T during growth on xylan or pectin. Appl Environ Microbiol 85: e02056-18. doi: 10.1128/AEM.02056-18.
[4] https://www.cazy.org/b7466.html
[5] Palevich N, Kelly WJ, Leahy SC, Altermann E, Rakonjac J, Attwood GT. 2017. The complete genome sequence of the rumen bacterium Butyrivibrio hungatei MB2003. Stand Genomic Sci 12: 72. doi: 10.1186/s40793-017-0285-8.
[6] Kopecny J, Zorec M, Mrazek J, Kobayashi Y, Marinsek-Logar R. 2003. Butyrivibrio hungatei sp. nov. and Pseudobutyrivibrio xylanivorans sp. nov., butyrate-producing bacteria from the rumen. Int J Syst Evol Microbiol 53: 201–9. doi: 10.1099/ijs.0.02345-0.
