Kandleria vitulina WCE2011: Difference between revisions
From Global Methane Hub Wikipedia
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=== Methylating ''Escherichia coli'' strains === | === Methylating ''Escherichia coli'' strains === | ||
''E. coli'' strain AGXXXXX engineered to carry methytransferases X, X, X for methylating plasmid DNA for ''K. vitulina'' WCE2011. | |||
== Culturing Conditions == | == Culturing Conditions == | ||
Revision as of 14:30, 20 October 2026
Introduction
Strain characteristics and function in the rumen
Strain history and information
Global Methane Hub Metadata
| Strain origin: | New Zealand1 |
| Isolated from: | Cow rumen |
| Sequenced by: | Rhiannon Cecil2 |
| Assembled by: | William G. Alexander3 |
| Genome and methylome analysis by: | William G. Alexander3 & Ashley Hall2 |
| MIC and culturing conditions by: | Rhiannon Cecil |
| Transformed by: | Rhiannon Cecil |
1Institute for Bioeconomy Science, Palmerston North, New Zealand. 2BiomEdit, Indianapolis, Indiana, United States. 3Oak Ridge National Lab, Oak Ridge, Tennessee, United States.
Genome
| K. vitulina WCE2011 Genome Summary | |
| Sequencing method | Oxford Nanopore |
| Contigs | 1 |
| Base pairs | 2.1 Mb |
| CDSs | 2,021 |
| CRISPR | 2 |
| Genes | 2,166 |
| rRNA | 24 |
| tRNA | 89 |
| Miscellaneous RNA | 31 |
| Antimicrobial resistance genes | None |
Methylome
Methylome analysis summary results
| K. vitulina WCE2011 Methylome Summary | |
| Isolation Motif | % Motif Methylation |
DefenseFinder Results
| K. vitulina WCE2011 DefenseFinder Results | |
| DefenseFinder System | # Found |
Methylating Escherichia coli strains
E. coli strain AGXXXXX engineered to carry methytransferases X, X, X for methylating plasmid DNA for K. vitulina WCE2011.
