Kandleria vitulina WCE2011: Difference between revisions
From Global Methane Hub Wikipedia
No edit summary |
|||
| Line 6: | Line 6: | ||
== Global Methane Hub Metadata == | == Global Methane Hub Metadata == | ||
{| class="wikitable" | |||
| valign="top" |Strain origin: | |||
| valign="top" |New Zealand<sup>1</sup> | |||
|- | |||
| valign="top" |Isolated from: | |||
| valign="top" |Cow rumen | |||
|- | |||
| valign="top" |Sequenced by: | |||
| valign="top" |Rhiannon Cecil<sup>2</sup> | |||
|- | |||
| valign="top" |Assembled by: | |||
| valign="top" |William G. Alexander<sup>3</sup> | |||
|- | |||
| valign="top" |Genome and methylome analysis by: | |||
| valign="top" |William G. Alexander<sup>3</sup> & Ashley Hall<sup>2</sup> | |||
|- | |||
| valign="top" |MIC and culturing conditions by: | |||
| valign="top" |Rhiannon Cecil | |||
|- | |||
| valign="top" |Transformed by: | |||
| valign="top" |Rhiannon Cecil | |||
|} | |||
<sup>1</sup>Institute for Bioeconomy Science, Palmerston North, New Zealand. <sup>2</sup>BiomEdit, Indianapolis, Indiana, United States. <sup>3</sup>Oak Ridge National Lab, Oak Ridge, Tennessee, United States. | |||
== Genome == | == Genome == | ||
{| class="wikitable" | |||
| colspan="2" valign="top" |''K. vitulina'' WCE2011 Genome Summary | |||
|- | |||
| valign="top" |Sequencing method | |||
| valign="top" |Oxford Nanopore | |||
|- | |||
| valign="top" |Contigs | |||
| valign="top" |1 | |||
|- | |||
| valign="top" |Base pairs | |||
| valign="top" |2.1 Mb | |||
|- | |||
| valign="top" |CDSs | |||
| valign="top" |2,021 | |||
|- | |||
| valign="top" |CRISPR | |||
| valign="top" |2 | |||
|- | |||
| valign="top" |Genes | |||
| valign="top" |2,166 | |||
|- | |||
| valign="top" |rRNA | |||
| valign="top" |24 | |||
|- | |||
| valign="top" |tRNA | |||
| valign="top" |89 | |||
|- | |||
| valign="top" |Miscellaneous RNA | |||
| valign="top" |31 | |||
|- | |||
| valign="top" |Antimicrobial resistance genes | |||
| valign="top" |None | |||
|} | |||
== Methylome == | == Methylome == | ||
=== Methylome analysis summary results === | === Methylome analysis summary results === | ||
{| class="wikitable" | |||
| colspan="2" |''K. vitulina'' WCE2011 Methylome Summary | |||
|- | |||
| valign="top" |Isolation Motif | |||
| valign="top" |% Motif Methylation | |||
|- | |||
| valign="top" | | |||
| valign="top" | | |||
|- | |||
| valign="top" | | |||
| valign="top" | | |||
|- | |||
| valign="top" | | |||
| valign="top" | | |||
|} | |||
=== DefenseFinder Results === | === DefenseFinder Results === | ||
{| class="wikitable" | |||
| colspan="2" valign="top" |''K. vitulina'' WCE2011 DefenseFinder Results | |||
|- | |||
| valign="top" |DefenseFinder System | |||
| valign="top" |# Found | |||
|- | |||
| valign="top" | | |||
| valign="top" | | |||
|- | |||
| valign="top" | | |||
| valign="top" | | |||
|- | |||
| valign="top" | | |||
| valign="top" | | |||
|- | |||
| valign="top" | | |||
| valign="top" | | |||
|} | |||
=== Methylating ''Escherichia coli'' strains === | === Methylating ''Escherichia coli'' strains === | ||
Revision as of 14:29, 20 October 2026
Introduction
Strain characteristics and function in the rumen
Strain history and information
Global Methane Hub Metadata
| Strain origin: | New Zealand1 |
| Isolated from: | Cow rumen |
| Sequenced by: | Rhiannon Cecil2 |
| Assembled by: | William G. Alexander3 |
| Genome and methylome analysis by: | William G. Alexander3 & Ashley Hall2 |
| MIC and culturing conditions by: | Rhiannon Cecil |
| Transformed by: | Rhiannon Cecil |
1Institute for Bioeconomy Science, Palmerston North, New Zealand. 2BiomEdit, Indianapolis, Indiana, United States. 3Oak Ridge National Lab, Oak Ridge, Tennessee, United States.
Genome
| K. vitulina WCE2011 Genome Summary | |
| Sequencing method | Oxford Nanopore |
| Contigs | 1 |
| Base pairs | 2.1 Mb |
| CDSs | 2,021 |
| CRISPR | 2 |
| Genes | 2,166 |
| rRNA | 24 |
| tRNA | 89 |
| Miscellaneous RNA | 31 |
| Antimicrobial resistance genes | None |
Methylome
Methylome analysis summary results
| K. vitulina WCE2011 Methylome Summary | |
| Isolation Motif | % Motif Methylation |
DefenseFinder Results
| K. vitulina WCE2011 DefenseFinder Results | |
| DefenseFinder System | # Found |
