Methanocatella gottschalkii HO: Difference between revisions
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== Introduction == | == Introduction == | ||
''Methanocatella gottschalkii'' HO<sup>T</sup> (formerly known as ''Methanobrevibacter gottschalkii'') is a type strain isolated from the enrichment of horse faeces<ref>Miller, T. L. (2002). "Description of Methanobrevibacter gottschalkii sp. nov., Methanobrevibacter thaueri sp. nov., Methanobrevibacter woesei sp. nov. and Methanobrevibacter wolinii sp. nov". International Journal of Systematic and Evolutionary Microbiology. 52 (3): 819–822. https://doi.org/10.1099/00207713-52-3-819.</ref>. This methanogen, along with ''Methanobrevibacter ruminantium'', comprises about 74% of total archaeal OTUs from rumen samples collected across geographical regions, hosts, and diets <ref>Henderson, G., Cox, F., Ganesh, S. ''et al.'' Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range. ''Sci Rep'' '''5''', 14567 (2015). https://doi.org/10.1038/srep14567. </ref>. This universality and limited diversity could make it possible to mitigate methane emissions by developing strategies that target the few dominant methanogens. | |||
== Global Methane Hub Metadata == | == Global Methane Hub Metadata == | ||
| Line 69: | Line 69: | ||
|Sodium sulfite | |Sodium sulfite | ||
|0.5 mM | |0.5 mM | ||
| | |0.3 mM | ||
|- | |- | ||
|Mevinolin | |Mevinolin | ||
|40 μM | |40 μM | ||
| | |20 μM | ||
|- | |- | ||
|5-fluoroorotic acid (5-FOA) | |5-fluoroorotic acid (5-FOA) | ||
|Insensitive | |Insensitive | ||
| | |Insensitive | ||
|- | |- | ||
|8-azahypoxanthine (8-AH) | |8-azahypoxanthine (8-AH) | ||
|Insensitive | |Insensitive | ||
| | |Insensitive | ||
|- | |- | ||
|6-mercaptopurine (6-MP) | |6-mercaptopurine (6-MP) | ||
|Insensitive | |Insensitive | ||
| | |Insensitive | ||
|- | |- | ||
|5-fluorouracil (5-FU) | |5-fluorouracil (5-FU) | ||
| Line 93: | Line 93: | ||
|Sodium 2-bromoethanesulfonate (BES) | |Sodium 2-bromoethanesulfonate (BES) | ||
|2 mM | |2 mM | ||
| | |1 mM | ||
|} | |} | ||
| Line 103: | Line 103: | ||
== External Links == | == External Links == | ||
Revision as of 21:18, 14 October 2026
Introduction
Methanocatella gottschalkii HOT (formerly known as Methanobrevibacter gottschalkii) is a type strain isolated from the enrichment of horse faeces[1]. This methanogen, along with Methanobrevibacter ruminantium, comprises about 74% of total archaeal OTUs from rumen samples collected across geographical regions, hosts, and diets [2]. This universality and limited diversity could make it possible to mitigate methane emissions by developing strategies that target the few dominant methanogens.
Global Methane Hub Metadata
| Origin: | Leibniz Institute DSMZ, Germany |
| Sequenced by: | Plasmidsaurus, ONT sequencing |
| Assembled by: | Christian Heryakusuma |
| Methylome called by: | William G. Alexander |
| Methyltransferases cloned by: | Roy Rodriguez Carrero |
| MIC and Culturing Conditions by: | Christian Heryakusuma |
| Transformation by: |
Genome
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DefenseFinder Results
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Methylome
| #motif | methylCounts | totalCounts | %motifsMethyl |
| C(6mA)YNNNNNRTTG | 1495 | 1558 | 95.96 |
| CA(6mA)YNNNNNRTG | 1522 | 1558 | 97.69 |
The methylome was analyzed using MIJAMP[3]. 4mC and 5mC methylation motifs were not present in this isolate.
Methylating E. coli
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Culturing Conditions
M. gottschalkii HO is cultivated in GMH-VT2 medium at 37°C and 50 rpm with a 30 psig gas mixture of H2:CO2 (80:20, v/v) as an energy substrate.
Antimicrobial MIC Tests
| Antibiotics | Concentration | |
|---|---|---|
| Liquid | Solid | |
| Sodium sulfite | 0.5 mM | 0.3 mM |
| Mevinolin | 40 μM | 20 μM |
| 5-fluoroorotic acid (5-FOA) | Insensitive | Insensitive |
| 8-azahypoxanthine (8-AH) | Insensitive | Insensitive |
| 6-mercaptopurine (6-MP) | Insensitive | Insensitive |
| 5-fluorouracil (5-FU) | 0.25 mg/mL | 0.15 mg/mL |
| Sodium 2-bromoethanesulfonate (BES) | 2 mM | 1 mM |
Protocols
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Transformation Results
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External Links
- ↑ Miller, T. L. (2002). "Description of Methanobrevibacter gottschalkii sp. nov., Methanobrevibacter thaueri sp. nov., Methanobrevibacter woesei sp. nov. and Methanobrevibacter wolinii sp. nov". International Journal of Systematic and Evolutionary Microbiology. 52 (3): 819–822. https://doi.org/10.1099/00207713-52-3-819.
- ↑ Henderson, G., Cox, F., Ganesh, S. et al. Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range. Sci Rep 5, 14567 (2015). https://doi.org/10.1038/srep14567.
- ↑ Alyssa K Tidwell, Evelyn Faust, Carrie A Eckert, Adam M Guss, William G Alexander, Discovering methylated DNA motifs in bacterial nanopore sequencing data with MIJAMP, Journal of Industrial Microbiology and Biotechnology, Volume 52, 2025, kuaf022, https://doi.org/10.1093/jimb/kuaf022.
