Streptococcus equinus B315: Difference between revisions
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== Methylome == | == Methylome == | ||
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| valign="top" |'''#6mA modified motifs''' | |||
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| valign="top" |'''#motif''' | |||
| valign="top" |methylCounts | |||
| valign="top" |totalCounts | |||
| valign="top" |%motifsMethyl | |||
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| valign="top" |'''GAR(6mA)NNNNNNNTAC''' | |||
| valign="top" |412 | |||
| valign="top" |430 | |||
| valign="top" |95.81 | |||
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| valign="top" |'''GT(6mA)NNNNNNNTYTC''' | |||
| valign="top" |413 | |||
| valign="top" |430 | |||
| valign="top" |96.05 | |||
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== Methylating E. coli Strains == | == Methylating E. coli Strains == | ||
Revision as of 17:00, 29 October 2026
Introduction
Streptococcus equinus B315
Streptococcus equinus B315 was isolated from bovine rumen contents in NZ [1]. B315 is proteolytic, Gram positive, and able to ferment a wide range of carbohydrates. Its main fermentation product is lactate, together with succinate and acetate [1]. The B315 genome encodes two lantibiotic bacteriocin biosynthetic gene clusters.
The draft genome for B315 (1,786,673 bp) was generated through the Hungate1000 project with JGI [2].
NCBI: Streptococcus equinus.
GTDB: Streptococcus equinus. B315 belongs to the same species group as the S. equinus type strain (DSM 20558).
Risk group: 2.
Global Methane Hub Metadata
| Origin: | New Zealand |
| Sequenced by: | Ahmed Hetta and Yuqi Li |
| Assembled by: | William Alexander |
| Methylome called by: | William Alexander |
| Methyltransferases cloned by: | |
| MIC and Culturing Conditions by: | |
| Transformation by: | Ahmed Hetta |
Genome
DefenseFinder Results
Methylome
| #6mA modified motifs | |||
| #motif | methylCounts | totalCounts | %motifsMethyl |
| GAR(6mA)NNNNNNNTAC | 412 | 430 | 95.81 |
| GT(6mA)NNNNNNNTYTC | 413 | 430 | 96.05 |
Methylating E. coli Strains
Culturing Conditions
Antibiotic MIC Tests
Protocols
Transformation Results
External Links
[1] Attwood GT, Reilly K. 1995. Identification of proteolytic rumen bacteria isolated from New Zealand cattle. J Appl Bacteriol 79: 22-9. doi: 10.1111/j.1365-2672.1995.tb03119.x.
[1] Seshadri R, Leahy SC, Attwood GT, Teh KH, Lambie SC, Cookson AL, Eloe-Fadrosh EA, Pavlopoulos GA, Hadjithomas M, Varghese NJ, Paez-Espino D; Hungate1000 project collaborators; Perry R, Henderson G, Creevey CJ, Terrapon N, Lapebie P, Drula E, Lombard V, Rubin E, Kyrpides NC, Henrissat B, Woyke T, Ivanova NN, Kelly WJ. 2019. Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection. Nature Biotechnol 36: 359-367. doi: 10.1038/nbt.4110.
