Pseudobutyrivibrio ruminis A12-1T: Difference between revisions
Created page with "== Introduction == === Strain characteristics and function in the rumen === === Strain history and information === == Global Methane Hub Metadata == {| class="wikitable" | valign="top" |Strain origin: | valign="top" |Sweden |- | valign="top" |Isolated from: | valign="top" |Cow rumen |- | valign="top" |Sequenced by: | valign="top" | |- | valign="top" |Assembled by: | valign="top" |William G. Alexander |- | valign="top" |Genome and methylome analysis by: | valign="top"..." |
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== Introduction == | == Introduction == | ||
'''Pseudobutyrivibrio ruminis A12-1<sup>T</sup>''' | |||
Pseudobutyrivibrio ruminis A12-1<sup>T</sup> (DSM 9787) was isolated from bovine rumen contents in Sweden [1]. It stains Gram negative and ferments a range of carbohydrates producing butyrate, formate and lactate. It is the type species of the genus Pseudobutyrivibrio within the family Lachnospiraceae and the type stain of the P. ruminis species [2] | |||
The draft genome for A12-1 (3,020,378 bp) was generated through the Hungate1000 project with JGI [3]. | |||
As with Butyrivibrio species A12-1has two distinct respiratory enzyme complexes, Rnf and Ech, which couple with two ATP synthases in separate chemiosmotic circuits and impact energy conservation in these organisms [4]. | |||
LPSN: Pseudobutyrivibrio ruminis van Gylswyk et al. 1996 | |||
NCBI: Pseudobutyrivibrio ruminis. | |||
GTBD: Pseudobutyrivibrio ruminis. | |||
Risk group: 1 | |||
=== Strain characteristics and function in the rumen === | === Strain characteristics and function in the rumen === | ||
Revision as of 22:30, 20 October 2026
Introduction
Pseudobutyrivibrio ruminis A12-1T
Pseudobutyrivibrio ruminis A12-1T (DSM 9787) was isolated from bovine rumen contents in Sweden [1]. It stains Gram negative and ferments a range of carbohydrates producing butyrate, formate and lactate. It is the type species of the genus Pseudobutyrivibrio within the family Lachnospiraceae and the type stain of the P. ruminis species [2]
The draft genome for A12-1 (3,020,378 bp) was generated through the Hungate1000 project with JGI [3].
As with Butyrivibrio species A12-1has two distinct respiratory enzyme complexes, Rnf and Ech, which couple with two ATP synthases in separate chemiosmotic circuits and impact energy conservation in these organisms [4].
LPSN: Pseudobutyrivibrio ruminis van Gylswyk et al. 1996
NCBI: Pseudobutyrivibrio ruminis.
GTBD: Pseudobutyrivibrio ruminis.
Risk group: 1
Strain characteristics and function in the rumen
Strain history and information
Global Methane Hub Metadata
| Strain origin: | Sweden |
| Isolated from: | Cow rumen |
| Sequenced by: | |
| Assembled by: | William G. Alexander |
| Genome and methylome analysis by: | |
| MIC and culturing conditions by: | |
| Transformed by: |
Genome
| P. ruminis A12-1T Genome Summary | |
| Sequencing method | Oxford Nanopore |
| Contigs | |
| Base pairs | |
| CDSs | |
| CRISPR | |
| Genes | |
| rRNA | |
| tRNA | |
| Miscellaneous RNA | |
| Antimicrobial resistance genes | |
Methylome
Methylome analysis summary results
| P. ruminis A12-1T Methylome Summary | |
| Isolation Motif | % Motif Methylation |
DefenseFinder Results
| P. ruminis A12-1T DefenseFinder Results | |
| DefenseFinder System | # Found |
Methylating Escherichia coli strains
E. coli strain AGXXXXX engineered to carry methytransferases X, X, X for methylating plasmid DNA for P. ruminis A12-1T.
