Selenomonas ruminantium GA192: Difference between revisions
From Global Methane Hub Wikipedia
Created page with "Bacillota (firmicutes)- Negativicutes - Selenomonadales - Selenomonadaceae Bacillota (firmicutes)- Clostridia- Lachnospirales- Lachnospiraceae- Butyrivibrio == Genome == == Methylome == {| class="wikitable" |+ Methylome Motifs |- ! motif !! # site methylated !! total sites !! % methylated |- | G(6mA)TC || Example || Example || Example |- | G(6mA)CNNNNNCTC/<br />G(6mA)GNNNNNGTC || Example || Example || Example |- | GA(6mA)YNNNNNAATC/<br />G(6mA)TTNNNNRTTC || Example |..." |
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Bacillota (firmicutes)- Negativicutes - Selenomonadales - Selenomonadaceae | Bacillota (firmicutes)- Negativicutes - Selenomonadales - Selenomonadaceae | ||
== Genome == | == Genome == | ||
Revision as of 01:10, 1 October 2026
Bacillota (firmicutes)- Negativicutes - Selenomonadales - Selenomonadaceae
Genome
Methylome
| motif | # site methylated | total sites | % methylated |
|---|---|---|---|
| G(6mA)TC | Example | Example | Example |
| G(6mA)CNNNNNCTC/ G(6mA)GNNNNNGTC |
Example | Example | Example |
| GA(6mA)YNNNNNAATC/ G(6mA)TTNNNNRTTC |
Example | Example | Example |
| CC(6mA)GNNNNNTCG/ CG(6mA)NNNNNCTGG |
Example | Example | Example |
| GA(6mA)GNNNNNCTC/ G(6mA)GNNNNNCTTC |
Example | Example | Example |
| GA(6mA)CNNNNNACT/ (6mA)GTNNNNNGTTC |
Example | Example | Example |
E.coli methylation strain
Completed, AG22058
Antibiotic MIC tests
MIC test strip result
| Antibiotic | MIC |
|---|---|
| Ampicillin | 0.016ug/ml |
| Tetracycline | 0.094ug/ml |
| Trimethoprim | 8 ug/ml |
| Streptomycin | 2 ug/ml |
| Spectinomycin | 16ug/ml |
| Kanamycin | 3 ug/ml |
| Chloramphenicol | 0.5 ug/ml |
| Gentamicin | 2 ug/ml |
| Erythromycin | 0.2ug/ml |
Defensefinder prediction
| Type / Subtype | Mechanism | Note |
|---|---|---|
| PD-Lambda-1 (PD-Lambda-1) | ||
| PrrC (PrrC) | ||
| RM (RM_Type_IV) | ||
| Abi2 (Abi2) | ||
| VP1839 (VP1839) | ||
| Wadjet (Wadjet_I) | Lacks JetD (endonuclease) | |
| Eleos (Eleos) | ||
| Cas (CAS_Class1-Subtype-I-F) | ||
| SspBCDE (SspBCDE) | Lacks SspA & SspE (endonuclease) | |
| Cas (CAS_Class1-Subtype-III-D) | ||
| AbiD (AbiD) | ||
| Mokosh (Mokosh_Type_I_B) | ||
| VP1851 (VP1851) | ||
| Cas (CAS_Cluster) |
