Butyrivibrio fibrisolvens TB: Difference between revisions
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Created page with "== Genome == == Methylome == {| class="wikitable" |+ Caption text |- ! motif !! # site methylated !! total sites !! % methylated |- | ATTA(6mA)T || Example || Example || Example |- | C(5mC)TGA || Example || Example || Example |} == ''E.coli'' methylation strain == Completed, AG20809 == Antibiotic MIC tests == ==== MIC test strip result ==== {| class="wikitable" |+ MIC test strip result |- ! Antibiotic !! MIC |- | Ampicillin || 0.016ug/ml |- | streptomycin || 6ug/ml..." |
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| kanamycin || Resistant | | kanamycin || Resistant | ||
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== Defensefinder prediction == | |||
* Predicted RM I, II, III is not listed | |||
{| class="wikitable" | |||
|+ Defense Systems | |||
|- | |||
! Type / Subtype !! Mechanism !! Note | |||
|- | |||
| SspBCDE (SspBCDE) || Cut DNA without phosphorothioate modification || Lacks SspA & SspE (endonuclease) | |||
|- | |||
| HEC-02 (HEC-02) || || | |||
|- | |||
| Wadjet (Wadjet_I) || against closed-circular DNA (regardless of supercoiling state) || Lacks JetD (endonuclease) | |||
|- | |||
| AbiL (AbiL) || Against phage || | |||
|- | |||
| MazEF (MazEF) || Against phage || | |||
|- | |||
| AbiD (AbiD) || Against phage || | |||
|} | |} | ||
Revision as of 00:43, 1 October 2026
Genome
Methylome
| motif | # site methylated | total sites | % methylated |
|---|---|---|---|
| ATTA(6mA)T | Example | Example | Example |
| C(5mC)TGA | Example | Example | Example |
E.coli methylation strain
Completed, AG20809
Antibiotic MIC tests
MIC test strip result
| Antibiotic | MIC |
|---|---|
| Ampicillin | 0.016ug/ml |
| streptomycin | 6ug/ml |
| gentamicin | 0.38ug/ml |
| Spectinomycin | 2ug/ml |
| Chloramphenicol | 0.5ug/ml |
| Erythromycin | Resistant |
| Tetracycline | Resistant |
| kanamycin | Resistant |
Defensefinder prediction
- Predicted RM I, II, III is not listed
| Type / Subtype | Mechanism | Note |
|---|---|---|
| SspBCDE (SspBCDE) | Cut DNA without phosphorothioate modification | Lacks SspA & SspE (endonuclease) |
| HEC-02 (HEC-02) | ||
| Wadjet (Wadjet_I) | against closed-circular DNA (regardless of supercoiling state) | Lacks JetD (endonuclease) |
| AbiL (AbiL) | Against phage | |
| MazEF (MazEF) | Against phage | |
| AbiD (AbiD) | Against phage |
