Aristaeella lactis WTE2008T: Difference between revisions
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|Origin: | |Origin: | ||
| | |New Zealand, isolated by Samantha J. Noel [1] | ||
|- | |- | ||
|Sequenced by: | |Sequenced by: | ||
| | |Sam Mahoney-Kurpe | ||
|- | |- | ||
|Assembled by: | |Assembled by: | ||
| | |William G. Alexander | ||
|- | |- | ||
|Methylome called by: | |Methylome called by: | ||
| | |William G. Alexander | ||
|- | |- | ||
|Methyltransferases cloned by: | |Methyltransferases cloned by: | ||
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== Genome == | == Genome == | ||
{| class="wikitable" | |||
|+ | |||
! colspan="2" |Genome characteristics | |||
|- | |||
|Contigs | |||
|1 | |||
|- | |||
|size (bp) | |||
|3,442,562 | |||
|- | |||
|GC % | |||
|53.5 | |||
|- | |||
|CDS | |||
|3022 | |||
|- | |||
|rRNA | |||
|10 | |||
|- | |||
|tRNA | |||
|48 | |||
|- | |||
|CRISPR | |||
|0 | |||
|} | |||
== DefenseFinder Results == | == DefenseFinder Results == | ||
Latest revision as of 20:49, 8 November 2026
Introduction
Aristaeella lactis WTE2008T (DSM 112788, JCM 34734) was isolated from rumen contents of a dairy cow grazing a ryegrass pasture in New Zealand [1]. WTE2008 ferments a variety of substrates including the plant cell wall polysaccharides xylan and pectin, forming acetate, lactate, ethanol and hydrogen as end products [2].
NCBI: Aristaeella lactis
Risk Group: 1
Global Methane Hub Metadata
| Origin: | New Zealand, isolated by Samantha J. Noel [1] |
| Sequenced by: | Sam Mahoney-Kurpe |
| Assembled by: | William G. Alexander |
| Methylome called by: | William G. Alexander |
| Methyltransferases cloned by: | |
| MIC and Culturing Conditions by: | |
| Transformation by: |
Genome
| Genome characteristics | |
|---|---|
| Contigs | 1 |
| size (bp) | 3,442,562 |
| GC % | 53.5 |
| CDS | 3022 |
| rRNA | 10 |
| tRNA | 48 |
| CRISPR | 0 |
DefenseFinder Results
Methylome
Methylating E. coli Strains
| Methylated motif | Percent methylated |
|---|---|
| CCAAA(6mA) | 95.7 |
| A(5mC)GGG | 96.1 |
| C(5mC)CGT | 76.8 |
Culturing Conditions
Antibiotic MIC Tests
Protocols
Transformation Results
External Links
[1] Noel S. 2013. Cultivation and community composition analysis of plant-adherent rumen bacteria. PhD dissertation. Massey University, Palmerston North, New Zealand. https://mro.massey.ac.nz/server/api/core/bitstreams/bcfbe4cb-19a9-40c0-b5e8-61f9ddb90ce0/content.
[2] Mahoney-Kurpe SC, Palevich N, Noel SJ, Gagic D, Biggs PJ, Soni P, Reid PM, Koike S, Kobayashi Y, Janssen PH, Attwood GT, Moon CD. 2023. Aristaeella hokkaidonensis gen. nov. sp. nov. and Aristaeella lactis sp. nov., two rumen bacterial species of a novel proposed family, Aristaeellaceae fam. nov. Int J Syst Evol Microbiol 73:005831.
