Anaerovibrio lipolyticus 5ST: Difference between revisions
Introduction and external links |
|||
| (One intermediate revision by the same user not shown) | |||
| Line 16: | Line 16: | ||
== Global Methane Hub Metadata == | == Global Methane Hub Metadata == | ||
{| class="wikitable" | |||
|+ | |||
|Origin: | |||
|DSMZ | |||
|- | |||
|Sequenced by: | |||
|Makoto Adachi | |||
|- | |||
|Assembled by: | |||
|William G. Alexander | |||
|- | |||
|Methylome called by: | |||
|William G. Alexander | |||
|- | |||
|Methyltransferases cloned by: | |||
| | |||
|- | |||
|MIC and Culturing Conditions by: | |||
| | |||
|- | |||
|Transformation by: | |||
| | |||
|} | |||
== Genome == | == Genome == | ||
[[File:NVJKVF 1 1 1 circos.png|center|thumb|301x301px|Circos plot of ''A. lipolyticus'' 5S<sup>T</sup>. Source: Makoto Adachi]] | |||
== DefenseFinder Results == | == DefenseFinder Results == | ||
| Line 25: | Line 48: | ||
== Methylome == | == Methylome == | ||
{| class="wikitable" | |||
|'''Motif''' | |||
|'''Percent methylated''' | |||
|- | |||
|G(6mA)TC | |||
| align="right" |99.94 | |||
|- | |||
|GATGA(6mA) | |||
| align="right" |100 | |||
|- | |||
|GAA(6mA)CC | |||
| align="right" |98.2 | |||
|- | |||
|GCCC(6mA)G | |||
| align="right" |98.78 | |||
|- | |||
|G(6mA)CNNNNNTAAC | |||
| align="right" |100 | |||
|- | |||
|GTT(6mA)NNNNNGTC | |||
| align="right" |93.96 | |||
|- | |||
|G(6mA)GNNNNCTAA | |||
| align="right" |98.89 | |||
|- | |||
|TT(6mA)GNNNNCTC | |||
| align="right" |85.56 | |||
|- | |||
|CAG(4mC)TG | |||
| align="right" |96.22 | |||
|} | |||
== Methylating ''E. coli'' == | == Methylating ''E. coli'' == | ||
Latest revision as of 18:41, 30 October 2026
Introduction
Anaerovibrio lipolyticus 5ST
Anaerovibrio lipolyticus 5ST (DSM 3074) is an anaerobic Gram-negative bacterium isolated from sheep rumen contents in Scotland (UK) [1] and originally named Anaerovibrio lipolytica [3]. It is the type species of the genus Anaerovibrio within the family Selenomonadaceae and the type stain of the A. lipolyticus species [2]. Ribose, fructose and lactate were used as growth substrates and glycerol was fermented to propionate, and succinate [4]. It is regarded as one of the main lipolytic species in the rumen and lipases have been characterized [5].
A draft genome for A. lipolyticus 5S (2,781,134 bp) was generated by the JGI GEBA project.
LPSN: Anaerovibrio lipolyticus corrig. Hungate 1966
NCBI: Anaerovibrio lipolyticus
GTDB: Anaerovibrio lipolyticus
Risk group: 1
Global Methane Hub Metadata
| Origin: | DSMZ |
| Sequenced by: | Makoto Adachi |
| Assembled by: | William G. Alexander |
| Methylome called by: | William G. Alexander |
| Methyltransferases cloned by: | |
| MIC and Culturing Conditions by: | |
| Transformation by: |
Genome
DefenseFinder Results
add here
Methylome
| Motif | Percent methylated |
| G(6mA)TC | 99.94 |
| GATGA(6mA) | 100 |
| GAA(6mA)CC | 98.2 |
| GCCC(6mA)G | 98.78 |
| G(6mA)CNNNNNTAAC | 100 |
| GTT(6mA)NNNNNGTC | 93.96 |
| G(6mA)GNNNNCTAA | 98.89 |
| TT(6mA)GNNNNCTC | 85.56 |
| CAG(4mC)TG | 96.22 |
Methylating E. coli
add here
Culturing Conditions
add here
Antimicrobial MIC Tests
add here
Protocols
add here
Transformation Results
add here
External Links
[1] Hobson PN, Mann SO. 1961. The isolation of glycerol fermenting and lipolytic bacteria from the rumen of the sheep. J Gen Microbiol 25: 227–240. doi: 10.1099/00221287-25-2-227.
[2] https://bacdive.dsmz.de/strain/17117.
[3] Hungate RE. 1966. The rumen and its microbes. Academic Press, New York, USA.
[4] Prins RA, Lankhorst A, van der Meer P, Van Nevel CJ. 1975. Some characteristics of Anaerovibrio lipolytica a rumen lipolytic organism. Antonie Van Leeuwenhoek 41: 1-11. doi: 10.1007/BF02565031.
[5] Privé F, Kaderbhai NN, Girdwood S, Worgan HJ, Pinloche E, Scollan ND, Huws SA, Newbold CJ.2013. Identification and characterization of three novel lipases belonging to families II and V from Anaerovibrio lipolyticus 5ST. PLoS One 8 : e69076. doi: 10.1371/journal.pone.0069076.
