Selenomonas ruminantium GA192 - Revision history

Madachi at 18:23, 30 October 2026

2026-10-30T18:23:18Z

← Older revision		Revision as of 18:23, 30 October 2026
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	== Genome ==		== Genome ==
			[[File:55RBRH 2 Sel GA-192 1 circos.png\|center\|thumb\|300x300px\|Circos plot of ''S. ruminantium'' GA192<sup>T</sup>. Source: Makoto Adachi]]

			== DefenseFinder Results ==
	== Methylome ==		== Methylome ==

Madachi at 18:34, 29 October 2026

2026-10-29T18:34:20Z

← Older revision		Revision as of 18:34, 29 October 2026
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			[[File:Image1-8.png\|thumb\|350x350px\|Scanning electron microscopic image of ''Selenomonas ruminantium'' GA192<sup>T</sup>.
			<small>This photo belongs to the GMH Project and was taken by Kingsley Boateng.</small>]]
	Bacillota (firmicutes)- Negativicutes - Selenomonadales - Selenomonadaceae		Bacillota (firmicutes)- Negativicutes - Selenomonadales - Selenomonadaceae

Madachi: /* MIC test strip result */

2026-10-29T17:19:03Z

MIC test strip result

← Older revision		Revision as of 17:19, 29 October 2026
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	\|+ MIC test strip result		\|+ MIC test strip result
	\|-		\|-
	! Antibiotic !! ~~MIC~~		! Antibiotic !! '''Concentration (µg/ml)'''
	\|-		\|-
	\| Ampicillin \|\| 0.~~016ug/ml~~		\| Ampicillin \|\| 0.016
	\|-		\|-
	\| Tetracycline \|\| 0.~~094ug/ml~~		\| Tetracycline \|\| 0.094
	\|-		\|-
	\| Trimethoprim \|\| 8 ~~ug/ml~~		\| Trimethoprim \|\| 8
	\|-		\|-
	\| Streptomycin \|\| 2 ~~ug/ml~~		\| Streptomycin \|\| 2
	\|-		\|-
	\| Spectinomycin \|\| ~~16ug/ml~~		\| Spectinomycin \|\| 16
	\|-		\|-
	\| Kanamycin \|\| 3 ~~ug/ml~~		\| Kanamycin \|\| 3
	\|-		\|-
	\| Chloramphenicol \|\| 0.5 ~~ug/ml~~		\| Chloramphenicol \|\| 0.5
	\|-		\|-
	\| Gentamicin \|\| 2 ~~ug/ml~~		\| Gentamicin \|\| 2
	\|-		\|-
	\| Erythromycin \|\| 0.~~2ug/ml~~		\| Erythromycin \|\| 0.2
	\|}		\|}

Billkelleydonvis: Introduction and external links

2026-10-26T21:58:25Z

Introduction and external links

← Older revision		Revision as of 21:58, 26 October 2026
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	== Introduction ==		== Introduction ==
	'''Pseudoselenomonas ruminantium GA192<sup>T</sup>'''		'''''Pseudoselenomonas ruminantium'' GA192<sup>T</sup>'''

	Pseudoselenomonas ruminantium GA192<sup>T</sup> (DSM 2150) formerly Selenomonas ruminantium was isolated from bovine rumen contents from an animal fed fresh alfalfa in the USA [1]. GA192 is the type species of the genus Pseudoselenomonas within the family Selenomonadaceae and the type stain of the P. ruminantium species [2, 3]. GA192 is an anaerobic bacterium that ferments a broad range of carbohydrates and produces primarily propionate, lactate, and CO₂ [1, 2]. Lactate is not fermented [1], sulfate and fumarate but not nitrate are reduced.		''Pseudoselenomonas ruminantium'' GA192<sup>T</sup> (DSM 2150) formerly ''Selenomonas ruminantium'' was isolated from bovine rumen contents from an animal fed fresh alfalfa in the USA [1]. GA192 is the type species of the genus ''Pseudoselenomonas'' within the family ''Selenomonadaceae'' and the type stain of the ''P. ruminantium'' species [2, 3]. GA192 is an anaerobic bacterium that ferments a broad range of carbohydrates and produces primarily propionate, lactate, and CO₂ [1, 2]. Lactate is not fermented [1], sulfate and fumarate but not nitrate are reduced.

	The draft genome for GA192 (3,387,070 bp) was generated through the Hungate1000 project with JGI [4]. A20,067 bp plasmid has been predicted from the genome sequence.		The draft genome for GA192 (3,387,070 bp) was generated through the Hungate1000 project with JGI [4]. A20,067 bp plasmid has been predicted from the genome sequence.

	LPSN: Pseudoselenomonas ruminantium (Certes 1889) Heng and Kittelmann 2026		LPSN: ''Pseudoselenomonas ruminantium'' (Certes 1889) Heng and Kittelmann 2026

	NCBI: Pseudoselenomonas ruminantium.		NCBI: ''Pseudoselenomonas ruminantium''.

	GTDB: Selenomonas_A ruminantium.		GTDB: ''Selenomonas_A ruminantium''.

	Risk group: 1.		Risk group: 1.
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	== External Links ==		== External Links ==
	[1] Bryant MP. 1956. The characteristics of strains of Selenomonas isolated from bovine rumen contents. J Bacteriol 72: 162-7. doi: 10.1128/jb.72.2.162-167.1956.		[1] Bryant MP. 1956. The characteristics of strains of ''Selenomonas'' isolated from bovine rumen contents. J Bacteriol 72: 162-7. doi: 10.1128/jb.72.2.162-167.1956.

	[2] Heng YC, Kittelmann S. 2026. Taxonomic reclassification and expansion of the family Selenomonadaceae. Int J Syst Evol Microbiol 76: 7178. doi: 10.1099/ijsem.0.007178.		[2] Heng YC, Kittelmann S. 2026. Taxonomic reclassification and expansion of the family ''Selenomonadaceae''. Int J Syst Evol Microbiol 76: 7178. doi: 10.1099/ijsem.0.007178.

	[3] <nowiki>https://bacdive.dsmz.de/strain/17156</nowiki>.		[3] <nowiki>https://bacdive.dsmz.de/strain/17156</nowiki>.

	[4] Seshadri R, Leahy SC, Attwood GT, Teh KH, Lambie SC, Cookson AL, Eloe-Fadrosh EA, Pavlopoulos GA, Hadjithomas M, Varghese NJ, Paez-Espino D; Hungate1000 project collaborators; Perry R, Henderson G, Creevey CJ, Terrapon N, Lapebie P, Drula E, Lombard V, Rubin E, Kyrpides NC, Henrissat B, Woyke T, Ivanova NN, Kelly WJ. 2019. Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection. Nature Biotechnol 36: 359-367. doi: 10.1038/nbt.4110.e		[4] Seshadri R, Leahy SC, Attwood GT, Teh KH, Lambie SC, Cookson AL, Eloe-Fadrosh EA, Pavlopoulos GA, Hadjithomas M, Varghese NJ, Paez-Espino D; Hungate1000 project collaborators; Perry R, Henderson G, Creevey CJ, Terrapon N, Lapebie P, Drula E, Lombard V, Rubin E, Kyrpides NC, Henrissat B, Woyke T, Ivanova NN, Kelly WJ. 2019. Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection. Nature Biotechnol 36: 359-367. doi: 10.1038/nbt.4110.e

Billkelleydonvis: introduction

2026-10-26T21:55:51Z

introduction

← Older revision		Revision as of 21:55, 26 October 2026
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	Pseudoselenomonas ruminantium GA192<sup>T</sup> (DSM 2150) formerly Selenomonas ruminantium was isolated from bovine rumen contents from an animal fed fresh alfalfa in the USA [1]. GA192 is the type species of the genus Pseudoselenomonas within the family Selenomonadaceae and the type stain of the P. ruminantium species [2, 3]. GA192 is an anaerobic bacterium that ferments a broad range of carbohydrates and produces primarily propionate, lactate, and CO₂ [1, 2]. Lactate is not fermented [1], sulfate and fumarate but not nitrate are reduced.		Pseudoselenomonas ruminantium GA192<sup>T</sup> (DSM 2150) formerly Selenomonas ruminantium was isolated from bovine rumen contents from an animal fed fresh alfalfa in the USA [1]. GA192 is the type species of the genus Pseudoselenomonas within the family Selenomonadaceae and the type stain of the P. ruminantium species [2, 3]. GA192 is an anaerobic bacterium that ferments a broad range of carbohydrates and produces primarily propionate, lactate, and CO₂ [1, 2]. Lactate is not fermented [1], sulfate and fumarate but not nitrate are reduced.

	The draft genome for ~~PC 18~~ (3,387,070 bp) was generated through the Hungate1000 project with JGI [4]. A20,067 bp plasmid has been predicted from the genome sequence.		The draft genome for GA192 (3,387,070 bp) was generated through the Hungate1000 project with JGI [4]. A20,067 bp plasmid has been predicted from the genome sequence.

	LPSN: Pseudoselenomonas ruminantium (Certes 1889) Heng and Kittelmann 2026		LPSN: Pseudoselenomonas ruminantium (Certes 1889) Heng and Kittelmann 2026

Billkelleydonvis: Introduction and external links

2026-10-26T21:49:35Z

Introduction and external links

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 Bacillota (firmicutes)- Negativicutes - Selenomonadales - Selenomonadaceae
 == Genome ==
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 | Cas (CAS_Cluster) || ||
 |}

Wangm3 at 01:10, 1 October 2026

2026-10-01T01:10:36Z

← Older revision		Revision as of 01:10, 1 October 2026
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	Bacillota (firmicutes)- Negativicutes - Selenomonadales - Selenomonadaceae		Bacillota (firmicutes)- Negativicutes - Selenomonadales - Selenomonadaceae

	~~Bacillota (firmicutes)- Clostridia- Lachnospirales- Lachnospiraceae- Butyrivibrio~~

	== Genome ==		== Genome ==

Wangm3: Created page with "Bacillota (firmicutes)- Negativicutes - Selenomonadales - Selenomonadaceae Bacillota (firmicutes)- Clostridia- Lachnospirales- Lachnospiraceae- Butyrivibrio == Genome == == Methylome == {| class="wikitable" |+ Methylome Motifs |- ! motif !! # site methylated !! total sites !! % methylated |- | G(6mA)TC || Example || Example || Example |- | G(6mA)CNNNNNCTC/
G(6mA)GNNNNNGTC || Example || Example || Example |- | GA(6mA)YNNNNNAATC/
G(6mA)TTNNNNRTTC || Example |..."

2026-10-01T01:10:22Z

Created page with "Bacillota (firmicutes)- Negativicutes - Selenomonadales - Selenomonadaceae Bacillota (firmicutes)- Clostridia- Lachnospirales- Lachnospiraceae- Butyrivibrio == Genome == == Methylome == {| class="wikitable" |+ Methylome Motifs |- ! motif !! # site methylated !! total sites !! % methylated |- | G(6mA)TC || Example || Example || Example |- | G(6mA)CNNNNNCTC/ G(6mA)GNNNNNGTC || Example || Example || Example |- | GA(6mA)YNNNNNAATC/ G(6mA)TTNNNNRTTC || Example |..."

New page

Bacillota (firmicutes)- Negativicutes - Selenomonadales - Selenomonadaceae

Bacillota (firmicutes)- Clostridia- Lachnospirales- Lachnospiraceae- Butyrivibrio

== Genome ==

== Methylome ==

{| class="wikitable"
|+ Methylome Motifs
|-
! motif !! # site methylated !! total sites !! % methylated
|-
| G(6mA)TC || Example || Example || Example
|-
| G(6mA)CNNNNNCTC/ G(6mA)GNNNNNGTC || Example || Example || Example
|-
| GA(6mA)YNNNNNAATC/ G(6mA)TTNNNNRTTC || Example || Example || Example
|-
| CC(6mA)GNNNNNTCG/ CG(6mA)NNNNNCTGG || Example || Example || Example
|-
| GA(6mA)GNNNNNCTC/ G(6mA)GNNNNNCTTC || Example || Example || Example
|-
| GA(6mA)CNNNNNACT/ (6mA)GTNNNNNGTTC || Example || Example || Example
|}

== ''E.coli'' methylation strain ==
Completed, AG22058

== Antibiotic MIC tests ==
==== MIC test strip result ====
{| class="wikitable"
|+ MIC test strip result
|-
! Antibiotic !! MIC
|-
| Ampicillin || 0.016ug/ml
|-
| Tetracycline || 0.094ug/ml
|-
| Trimethoprim || 8 ug/ml
|-
| Streptomycin || 2 ug/ml
|-
| Spectinomycin || 16ug/ml
|-
| Kanamycin || 3 ug/ml
|-
| Chloramphenicol || 0.5 ug/ml
|-
| Gentamicin || 2 ug/ml
|-
| Erythromycin || 0.2ug/ml
|}

== Defensefinder prediction ==
{| class="wikitable"
|+ Defense Systems
|-
! Type / Subtype !! Mechanism !! Note
|-
| PD-Lambda-1 (PD-Lambda-1) || ||
|-
| PrrC (PrrC) || ||
|-
| RM (RM_Type_IV) || ||
|-
| Abi2 (Abi2) || ||
|-
| VP1839 (VP1839) || ||
|-
| Wadjet (Wadjet_I) || || Lacks JetD (endonuclease)
|-
| Eleos (Eleos) || ||
|-
| Cas (CAS_Class1-Subtype-I-F) || ||
|-
| SspBCDE (SspBCDE) || || Lacks SspA & SspE (endonuclease)
|-
| Cas (CAS_Class1-Subtype-III-D) || ||
|-
| AbiD (AbiD) || ||
|-
| Mokosh (Mokosh_Type_I_B) || ||
|-
| VP1851 (VP1851) || ||
|-
| Cas (CAS_Cluster) || ||
|}