https://gmhwiki.alexandersci.com/index.php?action=history&feed=atom&title=Ruminococcus_albus_AD2013
Ruminococcus albus AD2013 - Revision history
2026-11-14T21:10:58Z
Revision history for this page on the wiki
MediaWiki 1.46.2
https://gmhwiki.alexandersci.com/index.php?title=Ruminococcus_albus_AD2013&diff=1317&oldid=prev
Billkelleydonvis: /* Strain history and information */
2026-10-29T21:22:37Z
<p><span class="autocomment">Strain history and information</span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 21:22, 29 October 2026</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Strain history and information ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Strain history and information ===</div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">'''''Ruminococcus albus'' AD2013'''</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">''Ruminococcus albus'' AD2013 (DSM 115563) was isolated from the plant-adherent fraction of bovine rumen contents in NZ [1, cow D]. AD2013 has not been phenotypically characterized but its genome encodes a broad range of carbohydrate active enzymes, as well as proteins containing dockerin and carbohydrate-binding domains. AD2013 is predicted to be cellulolytic, and to have similar metabolism to ''Ruminococcus albus'' 7.</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">The draft genome for AD2013 (4,234,989 bp) was generated through the Hungate1000 project with JGI [2].</ins></div></td></tr>
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<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">NCBI: ''Ruminococcus albus''/''Hominimerdicola alba''</ins></div></td></tr>
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<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">GTDB: ''Hominimerdicola alba_A''. AD2013 belongs to a different species group than the type strain of ''H. alba'' (7, DSM 20455) [3].</ins></div></td></tr>
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<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">Risk group: 1.</ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Global Methane Hub Metadata ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Global Methane Hub Metadata ==</div></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== External Links ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== External Links ==</div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[1] Noel S. 2013. Cultivation and community composition analysis of plant-adherent rumen bacteria. PhD dissertation. Massey University, Palmerston North, New Zealand. <nowiki>https://mro.massey.ac.nz/server/api/core/bitstreams/bcfbe4cb-19a9-40c0-b5e8-61f9ddb90ce0/content</nowiki>.</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[2] Seshadri R, Leahy SC, Attwood GT, Teh KH, Lambie SC, Cookson AL, Eloe-Fadrosh EA, Pavlopoulos GA, Hadjithomas M, Varghese NJ, Paez-Espino D; Hungate1000 project collaborators; Perry R, Henderson G, Creevey CJ, Terrapon N, Lapebie P, Drula E, Lombard V, Rubin E, Kyrpides NC, Henrissat B, Woyke T, Ivanova NN, Kelly WJ. 2019. Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection. Nature Biotechnol 36: 359-367. doi: 10.1038/nbt.4110.</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[3] Hisatomi A, Ohkuma M, Sakamoto M. 2026. ''Hominimerdicola intestinalis'' sp. nov. and ''Ruminococcus sporogenes'' sp. nov., isolated from human faeces, and reclassification of ''Ruminococcus albus'' Hungate 1957 as ''Hominimerdicola alba'' comb. nov. Int J Syst Evol Microbiol 76: 7091. doi: 10.1099/ijsem.0.007091.</ins></div></td></tr>
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Billkelleydonvis
https://gmhwiki.alexandersci.com/index.php?title=Ruminococcus_albus_AD2013&diff=975&oldid=prev
Rhiannon: Created page with "== Introduction == === Strain characteristics and function in the rumen === === Strain history and information === == Global Methane Hub Metadata == {| class="wikitable" | valign="top" |Strain origin: | valign="top" |New Zealand |- | valign="top" |Isolated from: | valign="top" |Cow rumen |- | valign="top" |Sequenced by: | valign="top" | |- | valign="top" |Assembled by: | valign="top" |William G. Alexander |- | valign="top" |Genome and methylome analysis by: | valign="..."
2026-10-20T14:42:30Z
<p>Created page with "== Introduction == === Strain characteristics and function in the rumen === === Strain history and information === == Global Methane Hub Metadata == {| class="wikitable" | valign="top" |Strain origin: | valign="top" |New Zealand |- | valign="top" |Isolated from: | valign="top" |Cow rumen |- | valign="top" |Sequenced by: | valign="top" | |- | valign="top" |Assembled by: | valign="top" |William G. Alexander |- | valign="top" |Genome and methylome analysis by: | valign="..."</p>
<p><b>New page</b></p><div>== Introduction ==<br />
<br />
=== Strain characteristics and function in the rumen ===<br />
<br />
=== Strain history and information ===<br />
<br />
== Global Methane Hub Metadata ==<br />
{| class="wikitable"<br />
| valign="top" |Strain origin:<br />
| valign="top" |New Zealand<br />
|-<br />
| valign="top" |Isolated from:<br />
| valign="top" |Cow rumen<br />
|-<br />
| valign="top" |Sequenced by:<br />
| valign="top" |<br />
|-<br />
| valign="top" |Assembled by:<br />
| valign="top" |William G. Alexander<br />
|-<br />
| valign="top" |Genome and methylome analysis by:<br />
| valign="top" |<br />
|-<br />
| valign="top" |MIC and culturing conditions by:<br />
| valign="top" |<br />
|-<br />
| valign="top" |Transformed by:<br />
| valign="top" |<br />
|}<br />
<br />
== Genome ==<br />
{| class="wikitable"<br />
| colspan="2" valign="top" |''R. albus'' AD2013 Genome Summary<br />
|-<br />
| valign="top" |Sequencing method<br />
| valign="top" |Oxford Nanopore<br />
|-<br />
| valign="top" |Contigs<br />
| valign="top" |<br />
|-<br />
| valign="top" |Base pairs<br />
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|-<br />
| valign="top" |CDSs<br />
| valign="top" |<br />
|-<br />
| valign="top" |CRISPR<br />
| valign="top" |<br />
|-<br />
| valign="top" |Genes<br />
| valign="top" |<br />
|-<br />
| valign="top" |rRNA<br />
| valign="top" |<br />
|-<br />
| valign="top" |tRNA<br />
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|-<br />
| valign="top" |Miscellaneous RNA<br />
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|-<br />
| valign="top" |Antimicrobial resistance genes<br />
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|}<br />
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== Methylome ==<br />
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=== Methylome analysis summary results ===<br />
{| class="wikitable"<br />
| colspan="2" |''R. albus'' AD2013 Methylome Summary<br />
|-<br />
| valign="top" |Isolation Motif<br />
| valign="top" |% Motif Methylation<br />
|-<br />
| valign="top" |<br />
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|}<br />
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=== DefenseFinder Results ===<br />
{| class="wikitable"<br />
| colspan="2" valign="top" |''R. albus'' AD2013 DefenseFinder Results<br />
|-<br />
| valign="top" |DefenseFinder System<br />
| valign="top" |# Found<br />
|-<br />
| valign="top" |<br />
| valign="top" |<br />
|-<br />
| valign="top" |<br />
| valign="top" |<br />
|-<br />
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|-<br />
| valign="top" |<br />
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|}<br />
<br />
=== Methylating ''Escherichia coli'' strains ===<br />
''E. coli'' strain AGXXXXX engineered to carry methytransferases X, X, X for methylating plasmid DNA for ''R. albus'' AD2013.<br />
<br />
== Culturing Conditions ==<br />
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== Antimicrobial Susceptibility ==<br />
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== Transformation Results ==<br />
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== External Links ==</div>
Rhiannon