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Lachnospiraceae bacterium YSB2008 - Revision history
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Billkelleydonvis: Introduction and external links
2026-11-01T20:43:05Z
<p>Introduction and external links</p>
<p><b>New page</b></p><div><br />
== Introduction ==<br />
'''''Lachnospiraceae'' bacterium YSB2008'''<br />
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''Lachnospiraceae'' bacterium YSB2008 (DSM 121616) was isolated from the plant-adherent fraction of bovine rumen contents in NZ [1, cow B]. It has not been phenotypically characterized.<br />
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Group A3 [FeFe]-hydrogenases appear to be the primary catalysts of H<sub>2</sub> production in ruminants. YSB2008 represents one of the uncharacterised cultured lineages that encodes group A3 [FeFe]-hydrogenases [2].<br />
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The draft genome for YSB2008 (2,686,267 bp) was generated through the Hungate1000 project with JGI [3].<br />
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NCBI: ''Lachnospiraceae'' bacterium.<br />
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GTDB: ''Eubacterium_Q'' sp000687655.<br />
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Risk group: 1.<br />
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== Global Methane Hub Metadata ==<br />
{| class="wikitable"<br />
|+<br />
|Origin:<br />
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|Sequenced by:<br />
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|Assembled by:<br />
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|Methylome called by:<br />
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|Methyltransferases cloned by:<br />
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|MIC and Culturing Conditions by:<br />
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|Transformation by:<br />
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== Genome ==<br />
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== DefenseFinder Results ==<br />
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== Methylome ==<br />
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== Methylating E. coli Strains ==<br />
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== Culturing Conditions ==<br />
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== Antibiotic MIC Tests ==<br />
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== Protocols ==<br />
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== Transformation Results ==<br />
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== External Links ==<br />
[1] Noel S. 2013. Cultivation and community composition analysis of plant-adherent rumen bacteria. PhD dissertation. Massey University, Palmerston North, New Zealand. <nowiki>https://mro.massey.ac.nz/server/api/core/bitstreams/bcfbe4cb-19a9-40c0-b5e8-61f9ddb90ce0/content</nowiki>.<br />
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[2] Greening C, Geier R, Wang C, Woods LC, Morales SE, McDonald MJ, Rushton-Green R, Morgan XC, Koike S, Leahy SC, Kelly WJ, Cann I, Attwood GT, Cook GM, Mackie RI. 2019. Diverse hydrogen production and consumption pathways influence methane production in ruminants. ISME J 13: 2617-2632. doi: 10.1038/s41396-019-0464-2.<br />
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[3] Seshadri R, Leahy SC, Attwood GT, Teh KH, Lambie SC, Cookson AL, Eloe-Fadrosh EA, Pavlopoulos GA, Hadjithomas M, Varghese NJ, Paez-Espino D; Hungate1000 project collaborators; Perry R, Henderson G, Creevey CJ, Terrapon N, Lapebie P, Drula E, Lombard V, Rubin E, Kyrpides NC, Henrissat B, Woyke T, Ivanova NN, Kelly WJ. 2019. Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection. Nature Biotechnol 36: 359-367. doi: 10.1038/nbt.4110.</div>
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