Rhiannon: Created page with "== Introduction == === Strain characteristics and function in the rumen === === Strain history and information === == Global Methane Hub Metadata == {| class="wikitable" | valign="top" |Strain origin: | valign="top" |USA |- | valign="top" |Isolated from: | valign="top" |Calf rumen |- | valign="top" |Sequenced by: | valign="top" |Rhiannon Cecil |- | valign="top" |Assembled by: | valign="top" |William G. Alexander |- | valign="top" |Genome and methylome analysis by: | v..."

2026-10-20T14:35:47Z

Created page with "== Introduction == === Strain characteristics and function in the rumen === === Strain history and information === == Global Methane Hub Metadata == {| class="wikitable" | valign="top" |Strain origin: | valign="top" |USA |- | valign="top" |Isolated from: | valign="top" |Calf rumen |- | valign="top" |Sequenced by: | valign="top" |Rhiannon Cecil |- | valign="top" |Assembled by: | valign="top" |William G. Alexander |- | valign="top" |Genome and methylome analysis by: | v..."

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== Introduction ==

=== Strain characteristics and function in the rumen ===

=== Strain history and information ===

== Global Methane Hub Metadata ==
{| class="wikitable"
| valign="top" |Strain origin:
| valign="top" |USA
|-
| valign="top" |Isolated from:
| valign="top" |Calf rumen
|-
| valign="top" |Sequenced by:
| valign="top" |Rhiannon Cecil
|-
| valign="top" |Assembled by:
| valign="top" |William G. Alexander
|-
| valign="top" |Genome and methylome analysis by:
| valign="top" |
|-
| valign="top" |MIC and culturing conditions by:
| valign="top" |
|-
| valign="top" |Transformed by:
| valign="top" |
|}

== Genome ==
{| class="wikitable"
| colspan="2" valign="top" |''E. limosum'' RF Genome Summary
|-
| valign="top" |Sequencing method
| valign="top" |Oxford Nanopore
|-
| valign="top" |Contigs
| valign="top" |
|-
| valign="top" |Base pairs
| valign="top" |
|-
| valign="top" |CDSs
| valign="top" |
|-
| valign="top" |CRISPR
| valign="top" |
|-
| valign="top" |Genes
| valign="top" |
|-
| valign="top" |rRNA
| valign="top" |
|-
| valign="top" |tRNA
| valign="top" |
|-
| valign="top" |Miscellaneous RNA
| valign="top" |
|-
| valign="top" |Antimicrobial resistance genes
| valign="top" |
|}

== Methylome ==

=== Methylome analysis summary results ===
{| class="wikitable"
| colspan="2" |''E. limosum'' RF Methylome Summary
|-
| valign="top" |Isolation Motif
| valign="top" |% Motif Methylation
|-
| valign="top" |
| valign="top" |
|-
| valign="top" |
| valign="top" |
|-
| valign="top" |
| valign="top" |
|}

=== DefenseFinder Results ===
{| class="wikitable"
| colspan="2" valign="top" |''E. limosum'' RF DefenseFinder Results
|-
| valign="top" |DefenseFinder System
| valign="top" |# Found
|-
| valign="top" |
| valign="top" |
|-
| valign="top" |
| valign="top" |
|-
| valign="top" |
| valign="top" |
|-
| valign="top" |
| valign="top" |
|}

=== Methylating ''Escherichia coli'' strains ===
''E. coli'' strain AGXXXXX engineered to carry methytransferases X, X, X for methylating plasmid DNA for ''E. limosum'' RF.

== Culturing Conditions ==

== Antimicrobial Susceptibility ==

== Transformation Results ==

== External Links ==

Eubacterium limosum RF - Revision history